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  5. AMTR_s00140p00045380

AMTR_s00140p00045380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00140.17

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00140p00045380

Target Alias Description ECC score Gene Family Method Actions
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.01 OrthoFinder output from all 47 species
AT3G04100 AGL57 AGAMOUS-like 57 0.02 OrthoFinder output from all 47 species
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT4G11880 AGL14 AGAMOUS-like 14 0.03 OrthoFinder output from all 47 species
Aev_g04765 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05851 AGL30 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14204 AGL18 MADS/AGL-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene17593.t1 AGL104, Aspi01Gene17593 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene17819.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene19456.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene19457.t1 AGL16, Aspi01Gene19457 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49761.t1 AGL15, Aspi01Gene49761 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene49765.t1 Aspi01Gene49765 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0009.g011725 FLC, AGL25, FLF MADS/AGL-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0009.g011788 XAL1, AGL12 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g13784 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g44922 AGL42 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.04G082300.1 AGL28, Ceric.04G082300 MADS/AGL-type transcription factor & original... 0.01 OrthoFinder output from all 47 species
Dac_g35640 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g33443 AGL16 MADS/AGL-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g32401 AGL10, CAL1, CAL not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01008139001 AGL2, SEP1 RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
GSVIVT01008560001 SOC1, AGL20, ATSOC1 RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
GSVIVT01008806001 PI RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
GSVIVT01010521001 AGL9, SEP3 RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
LOC_Os01g66290.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os02g07430.1 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os05g11414.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Lfl_g04547 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g23025 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25378 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g29215 AGL42 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32782 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_10256834g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_9544285g0010 AGL42 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g11525 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11231 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04915 AGL61, DIA MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g18075 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25344 AGL30 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g14875 AGL65 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g41504 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g020974 GL19, AGL19 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc01g093960.3.1 AGL6, Solyc01g093960 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Solyc02g089210.4.1 AGL7, AP1, Solyc02g089210 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 58
No external refs found!