AMTR_s00136p00027550 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00136.6

Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp5 RNA helicase

Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00136p00027550
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
Aob_g03604	No alias	RNA helicase *(RCF1) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01023849001	No alias	DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
Lfl_g16955	No alias	RNA helicase *(RCF1) & original description: none	0.03	OrthoFinder output from all 47 species
MA_175476g0010	No alias	RNA helicase (Prp5)	0.03	OrthoFinder output from all 47 species
Mp1g06750.1	No alias	RNA helicase (Prp5)	0.03	OrthoFinder output from all 47 species
Pnu_g06483	No alias	RNA helicase *(RCF1) & original description: none	0.03	OrthoFinder output from all 47 species
Smo6590	No alias	DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Solyc12g098700.1.1	Solyc12g098700	RNA helicase (Prp5)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	897	973
IPR011545	DEAD/DEAH_box_helicase_dom	656	827

External Links

No external refs found!