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  5. AMTR_s00135p00094680

AMTR_s00135p00094680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00135.53

Description : Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00135p00094680
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.01 OrthoFinder output from all 47 species
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 OrthoFinder output from all 47 species
Gb_27873 No alias RNA editing factor (POCO) 0.01 OrthoFinder output from all 47 species
LOC_Os12g07260.1 PPR596, LOC_Os12g07260 RNA editing factor (POCO) 0.01 OrthoFinder output from all 47 species
MA_170161g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_492314g0010 No alias RNA editing factor (POCO) 0.02 OrthoFinder output from all 47 species
MA_9997953g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
Msp_g25474 No alias RNA editing factor *(POCO) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc01g089870.3.1 Solyc01g089870 Pentatricopeptide repeat-containing protein At1g02150... 0.03 OrthoFinder output from all 47 species
Solyc11g006380.2.1 Solyc11g006380 Pentatricopeptide repeat-containing protein At1g60770... 0.01 OrthoFinder output from all 47 species
Zm00001e026211_P002 Zm00001e026211 Pentatricopeptide repeat-containing protein At1g02370,... 0.01 OrthoFinder output from all 47 species
Zm00001e036620_P001 Zm00001e036620 Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0016020 membrane IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 259 284
IPR002885 Pentatricopeptide_repeat 223 249
IPR002885 Pentatricopeptide_repeat 82 107
IPR002885 Pentatricopeptide_repeat 152 175
No external refs found!