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  5. AMTR_s00133p00101570

AMTR_s00133p00101570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00133.46

Description : DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana


Gene families : OG0002081 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00133p00101570
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Adi_g103003 No alias sRNA cargo-loAding helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Ala_g21332 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Aspi01Gene40999.t1 Aspi01Gene40999 sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Ceric.08G007800.1 Ceric.08G007800 sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020544.5 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Dcu_g08887 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Dcu_g19139 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
GSVIVT01025418001 No alias DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01033437001 No alias DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_00348 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_15078 No alias DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os03g59050.1 LOC_Os03g59050 DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
LOC_Os07g10250.1 LOC_Os07g10250 DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
MA_137324g0010 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_181920g0010 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Mp2g08020.1 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Msp_g08556 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Ore_g43213 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.05 OrthoFinder output from all 47 species
Ppi_g29242 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Sam_g15279 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.04 OrthoFinder output from all 47 species
Solyc03g052980.3.1 Solyc03g052980 DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Tin_g14053 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.04 OrthoFinder output from all 47 species
Zm00001e011396_P001 Zm00001e011396 DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e011397_P001 Zm00001e011397 DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 435 509
IPR011545 DEAD/DEAH_box_helicase_dom 179 359
No external refs found!