AMTR_s00132p00099120 (ATHNIR, NIR1, NIR,...)


Aliases : ATHNIR, NIR1, NIR, evm_27.TU.AmTr_v1.0_scaffold00132.24

Description : Nutrient uptake.nitrogen assimilation.nitrate assimilation.nitrite reductase


Gene families : OG0004859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004859_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00132p00099120
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT2G15620 ATHNIR, NIR1, NIR nitrite reductase 1 0.05 OrthoFinder output from all 47 species
Als_g33979 ATHNIR, NIR1, NIR EC_1.7 oxidoreductase acting on other nitrogenous... 0.04 OrthoFinder output from all 47 species
Ceric.19G051000.1 ATHNIR, NIR1,... EC_1.7 oxidoreductase acting on other nitrogenous... 0.08 OrthoFinder output from all 47 species
Dac_g01701 ATHNIR, NIR1, NIR EC_1.7 oxidoreductase acting on other nitrogenous... 0.03 OrthoFinder output from all 47 species
Ehy_g04922 ATHNIR, NIR1, NIR EC_1.7 oxidoreductase acting on other nitrogenous... 0.03 OrthoFinder output from all 47 species
GSVIVT01031737001 ATHNIR, NIR1, NIR Nutrient uptake.nitrogen assimilation.nitrate... 0.05 OrthoFinder output from all 47 species
LOC_Os01g25484.1 ATHNIR, NIR1,... nitrite reductase 0.03 OrthoFinder output from all 47 species
Len_g26686 ATHNIR, NIR1, NIR not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c27_6610V3.1 ATHNIR, NIR1,... nitrite reductase 1 0.02 OrthoFinder output from all 47 species
Solyc10g050890.2.1 ATHNIR, NIR1,... nitrite reductase 0.06 OrthoFinder output from all 47 species
Spa_g47079 ATHNIR, NIR1, NIR EC_1.7 oxidoreductase acting on other nitrogenous... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
MF GO:0020037 heme binding IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR006067 NO2/SO3_Rdtase_4Fe4S_dom 460 570
IPR006067 NO2/SO3_Rdtase_4Fe4S_dom 194 350
IPR005117 NiRdtase/SiRdtase_haem-b_fer 378 442
IPR005117 NiRdtase/SiRdtase_haem-b_fer 119 183
No external refs found!