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  5. AMTR_s00131p00018630

AMTR_s00131p00018630 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00131.4

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B2 component


Gene families : OG0004021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004021_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00131p00018630

Target Alias Description ECC score Gene Family Method Actions
Ala_g23643 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Aop_g29274 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Cba_g15531 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Cre12.g514450 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Lfl_g38051 No alias component *(SF3B2) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
MA_88936g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g16820.1 No alias component SF3B2 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
Sam_g19730 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo232603 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Zm00001e013359_P002 Zm00001e013359 component SF3B2 of splicing factor 3B complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007180 DUF382 108 235
IPR006568 PSP_pro-rich 243 290
No external refs found!