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  5. AMTR_s00129p00054950

AMTR_s00129p00054950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00129.29

Description : F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana


Gene families : OG0003405 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003405_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00129p00054950
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00248090 evm_27.TU.AmTr_v1... F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00030p00242200 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00040p00125130 evm_27.TU.AmTr_v1... F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00040p00128880 evm_27.TU.AmTr_v1... F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s03421p00001220 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
MA_15382g0010 No alias F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_51225g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_657411g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_9686g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 50 88
No external refs found!