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  5. AMTR_s00122p00127250

AMTR_s00122p00127250 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00122.65

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor


Gene families : OG0001052 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00122p00127250

Target Alias Description ECC score Gene Family Method Actions
AT1G13300 HRS1 myb-like transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G03500 No alias Homeodomain-like superfamily protein 0.1 OrthoFinder output from all 47 species
AT4G37180 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g030747 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aev_g37049 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene06858.t1 Aspi01Gene06858 GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene47868.t1 Aspi01Gene47868 GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g07617 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.06G020200.1 Ceric.06G020200 GARP subgroup HHO transcription factor & original... 0.08 OrthoFinder output from all 47 species
Dcu_g18561 No alias GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ehy_g29681 No alias GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01015462001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
LOC_Os01g08160.1 LOC_Os01g08160 G2-like GARP transcription factor 0.06 OrthoFinder output from all 47 species
Mp4g15170.1 No alias G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Msp_g25323 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g14104 No alias GARP subgroup HHO transcription factor & original... 0.07 OrthoFinder output from all 47 species
Pnu_g31164 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37435 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Smo402040 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Solyc12g006800.2.1 Solyc12g006800 G2-like GARP transcription factor 0.06 OrthoFinder output from all 47 species
Spa_g55258 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Tin_g11367 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Zm00001e003080_P001 Zm00001e003080 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e016724_P001 Zm00001e016724 G2-like GARP transcription factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 154 205
No external refs found!