AMTR_s00120p00054610 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00120.17

No description available


Gene families : OG0007272 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007272_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00120p00054610
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Adi_g023789 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g34121 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01375 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g36011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene43435.t1 Aspi01Gene43435 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035536 No alias not classified & original description: CDS=197-1189 0.03 OrthoFinder output from all 47 species
Ceric.21G054500.1 Ceric.21G054500 not classified & original description: pacid=50604005... 0.05 OrthoFinder output from all 47 species
Dac_g16506 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03754 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15402 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01026324001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os02g57030.1 LOC_Os02g57030 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g15800 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g36061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_764368g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_886123g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g09238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44935 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g17035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001919 No alias not classified & original description: CDS=1-1044 0.07 OrthoFinder output from all 47 species
Sam_g17647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo443338 No alias No description available 0.03 OrthoFinder output from all 47 species
Tin_g11049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016213_P001 Zm00001e016213 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0017038 protein import IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!