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Aliases : evm_27.TU.AmTr_v1.0_scaffold00119.60
Description : Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00119p00084460 | |
| Cluster | HCCA: Cluster_113 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00003p00209480 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00022p00121040 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g77360,... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00078p00045650 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g52640,... | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00119p00029960 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00131p00098210 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g13040,... | 0.08 | OrthoFinder output from all 47 species | |
| AMTR_s00142p00073110 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g73400,... | 0.05 | OrthoFinder output from all 47 species | |
| AT1G71060 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT1G73400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT1G74900 | OTP43 | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT1G80550 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT3G16010 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT3G61360 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G62470 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT5G15010 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | OrthoFinder output from all 47 species | |
| AT5G43820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g023342 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g057762 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g066581 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g03187 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g06010 | No alias | group-II intron mitochondrial splicing factor *(MISF68)... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g01092 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g07362 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g22080 | EMB2261 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g12835 | No alias | group-II intron mitochondrial splicing factor *(MISF68)... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g00769 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene64236.t1 | Aspi01Gene64236 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.09G082800.1 | Ceric.09G082800 | not classified & original description: pacid=50587508... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.18G058100.1 | Ceric.18G058100 | not classified & original description: pacid=50622152... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.24G045100.1 | Ceric.24G045100 | not classified & original description: pacid=50628969... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g07022 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g07047 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g03049 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g03918 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g32634 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g39023 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g02250 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g07270 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g50968 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01002056001 | No alias | Pentatricopeptide repeat-containing protein At5g64320,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008815001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01013390001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01015982001 | No alias | Pentatricopeptide repeat-containing protein At1g80880,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01017111001 | No alias | Pentatricopeptide repeat-containing protein At3g16010... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01017293001 | No alias | Pentatricopeptide repeat-containing protein At1g52640,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01027388001 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01029740001 | No alias | Pentatricopeptide repeat-containing protein At3g62470,... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_08432 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_11871 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_12874 | No alias | Pentatricopeptide repeat-containing protein At3g61360... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_12910 | No alias | Pentatricopeptide repeat-containing protein At1g06710,... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_13617 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_19758 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_20376 | No alias | group-II intron mitochondrial splicing factor (MISF68) | 0.05 | OrthoFinder output from all 47 species | |
| Gb_20750 | No alias | Pentatricopeptide repeat-containing protein At5g64320,... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_22860 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_23459 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_31799 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_32987 | No alias | Pentatricopeptide repeat-containing protein At5g18390,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_39082 | No alias | Pentatricopeptide repeat-containing protein At1g71060,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_41835 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g38950.1 | LOC_Os02g38950 | Pentatricopeptide repeat-containing protein At3g04130,... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g51840.1 | LOC_Os03g51840 | Pentatricopeptide repeat-containing protein At3g49730... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os05g28720.1 | LOC_Os05g28720 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os08g28180.1 | LOC_Os08g28180 | Pentatricopeptide repeat-containing protein At2g13420,... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g19159 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g06707 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10432868g0030 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| MA_10433557g0010 | No alias | Pentatricopeptide repeat-containing protein At2g27800,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_21580g0010 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.03 | OrthoFinder output from all 47 species | |
| MA_355286g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_38485g0010 | No alias | Pentatricopeptide repeat-containing protein At1g63080,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_39587g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_455059g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| MA_8206159g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.02 | OrthoFinder output from all 47 species | |
| MA_933431g0010 | No alias | Pentatricopeptide repeat-containing protein At1g20300,... | 0.02 | OrthoFinder output from all 47 species | |
| Mp4g20290.1 | No alias | Pentatricopeptide repeat-containing protein At3g06920... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g08820 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g08945 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g16371 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g14416 | PPR40 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0017.g007283 | No alias | not classified & original description: CDS=1-1626 | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g006850.1.1 | Solyc01g006850 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g097130.4.1 | Solyc01g097130 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc03g116540.1.1 | Solyc03g116540 | Pentatricopeptide repeat-containing protein At1g52640,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g117570.3.1 | Solyc03g117570 | Pentatricopeptide repeat-containing protein At1g80880,... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc04g071280.3.1 | Solyc04g071280 | Pentatricopeptide repeat-containing protein At3g61360... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g076370.4.1 | Solyc04g076370 | Pentatricopeptide repeat-containing protein At2g27800,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g079150.1.1 | Solyc04g079150 | Pentatricopeptide repeat-containing protein At1g73400,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g083200.3.1 | Solyc06g083200 | Pentatricopeptide repeat-containing protein At3g25210,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g082390.3.1 | Solyc09g082390 | Pentatricopeptide repeat-containing protein At3g22670,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g097840.2.1 | Solyc09g097840 | Pentatricopeptide repeat-containing protein At5g18390,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g071670.2.1 | Solyc11g071670 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g06924 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g09961 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e005446_P003 | Zm00001e005446 | group-II intron mitochondrial splicing factor (MISF68) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e006773_P001 | Zm00001e006773 | Pentatricopeptide repeat-containing protein At1g80550,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e013118_P001 | Zm00001e013118 | Pentatricopeptide repeat-containing protein At3g61360... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e031478_P001 | Zm00001e031478 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e036197_P001 | Zm00001e036197 | Pentatricopeptide repeat-containing protein At1g71060,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e036305_P001 | Zm00001e036305 | Pentatricopeptide repeat-containing protein At3g25210,... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
| MF | GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity | IEP | HCCA |
| CC | GO:0005694 | chromosome | IEP | HCCA |
| BP | GO:0006265 | DNA topological change | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0071103 | DNA conformation change | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| No external refs found! |