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  5. AMTR_s00114p00100630

AMTR_s00114p00100630 (WIP3,...)


Aliases : WIP3, evm_27.TU.AmTr_v1.0_scaffold00114.41

Description : Zinc finger protein WIP3 OS=Arabidopsis thaliana


Gene families : OG0001814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00114p00100630
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT1G13290 WIP6, DOT5 C2H2-like zinc finger protein 0.05 OrthoFinder output from all 47 species
Azfi_s0011.g012566 WIP5 C2H2 subclass WIP transcription factor & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01009046001 TT1, WIP1 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 OrthoFinder output from all 47 species
GSVIVT01032076001 WIP2, NTT RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.08 OrthoFinder output from all 47 species
LOC_Os05g37190.1 WIP5, LOC_Os05g37190 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os08g39390.1 WIP2, NTT, LOC_Os08g39390 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
MA_3555g0010 WIP6, DOT5 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Pnu_g12905 WIP2, NTT C2H2 subclass WIP transcription factor & original... 0.02 OrthoFinder output from all 47 species
Solyc06g074360.4.1 WIP3, Solyc06g074360 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e009663_P001 WIP6, DOT5,... C2H2 zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
Zm00001e026959_P001 WIP5, Zm00001e026959 C2H2 zinc finger transcription factor 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!