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  5. AMTR_s00113p00130020

AMTR_s00113p00130020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00113.29

Description : Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00113p00130020
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AT5G16860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g13967 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24236 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g12574 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15873 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g19063 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05964 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46872 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g49820 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g10511 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06745 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g14903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g23637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g24046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10472 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19745 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10265 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g17546 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16320 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g098150.3.1 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 231 261
IPR002885 Pentatricopeptide_repeat 304 328
IPR002885 Pentatricopeptide_repeat 330 377
IPR002885 Pentatricopeptide_repeat 128 175
No external refs found!