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  5. AMTR_s00111p00143660

AMTR_s00111p00143660 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00111.124

Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec31 scaffolding component


Gene families : OG0003227 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003227_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00111p00143660

Target Alias Description ECC score Gene Family Method Actions
AT3G63460 No alias transducin family protein / WD-40 repeat family protein 0.04 OrthoFinder output from all 47 species
Adi_g011557 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Adi_g057724 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Adi_g081430 No alias scaffold component *(Sec31) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Aev_g07314 No alias scaffold component *(Sec31) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Aob_g15456 No alias scaffold component *(Sec31) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.3 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.4 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.01 OrthoFinder output from all 47 species
Cre12.g522450 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.01 OrthoFinder output from all 47 species
Dcu_g03156 No alias scaffold component *(Sec31) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Dde_g05955 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Gb_38895 No alias scaffolding component Sec31 of coat protein complex 0.04 OrthoFinder output from all 47 species
Len_g13782 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
MA_10435529g0010 No alias scaffolding component Sec31 of coat protein complex 0.03 OrthoFinder output from all 47 species
Mp7g09730.1 No alias scaffolding component Sec31 of coat protein complex 0.02 OrthoFinder output from all 47 species
Ore_g03111 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Ore_g26748 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Pir_g13045 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Pnu_g15148 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Ppi_g32771 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Sam_g04414 No alias scaffold component *(Sec31) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Solyc01g088020.3.1 Solyc01g088020 scaffolding component Sec31 of coat protein complex 0.03 OrthoFinder output from all 47 species
Spa_g11489 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Zm00001e010894_P003 Zm00001e010894 scaffolding component Sec31 of coat protein complex 0.03 OrthoFinder output from all 47 species
Zm00001e035747_P003 Zm00001e035747 scaffolding component Sec31 of coat protein complex 0.02 OrthoFinder output from all 47 species

IEP
Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR009917 SRA1/Sec31 266 403
No external refs found!