Aliases : evm_27.TU.AmTr_v1.0_scaffold00110.121
Description : DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana
Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00077p00041680 | emb1507,... | DExH-box ATP-dependent RNA helicase DExH12... | 0.01 | OrthoFinder output from all 47 species | |
AT5G61140 | No alias | U5 small nuclear ribonucleoprotein helicase | 0.07 | OrthoFinder output from all 47 species | |
Adi_g085426 | No alias | RNA helicase *(Brr2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g29910 | No alias | RNA helicase *(Brr2) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Ala_g04355 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g14557 | No alias | RNA helicase *(Brr2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aop_g09018 | No alias | RNA helicase *(Brr2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene33378.t1 | Aspi01Gene33378 | RNA helicase *(Brr2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene33379.t1 | Aspi01Gene33379 | RNA helicase *(Brr2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.1Z134800.1 | Ceric.1Z134800 | not classified & original description: pacid=50597112... | 0.07 | OrthoFinder output from all 47 species | |
Ceric.1Z263400.1 | Ceric.1Z263400 | RNA helicase *(Brr2) & original description:... | 0.06 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000865.27 | emb1507 | DExH-box ATP-dependent RNA helicase DExH12... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000865.28 | emb1507 | DExH-box ATP-dependent RNA helicase DExH12... | 0.02 | OrthoFinder output from all 47 species | |
Cre17.g744147 | emb1507 | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g02389 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dac_g12553 | No alias | RNA helicase *(Brr2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g12406 | No alias | RNA helicase *(Brr2) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
Dde_g03005 | No alias | RNA helicase *(Brr2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01007875001 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.15 | OrthoFinder output from all 47 species | |
GSVIVT01010769001 | emb1507 | DExH-box ATP-dependent RNA helicase DExH12... | 0.03 | OrthoFinder output from all 47 species | |
Gb_18049 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.05 | OrthoFinder output from all 47 species | |
Gb_27895 | emb1507 | RNA helicase (Brr2) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os02g01740.1 | emb1507, LOC_Os02g01740 | RNA helicase (Brr2) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g11470.1 | LOC_Os03g11470 | DExH-box ATP-dependent RNA helicase DExH14... | 0.09 | OrthoFinder output from all 47 species | |
Len_g21125 | No alias | RNA helicase *(Brr2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Lfl_g09106 | No alias | RNA helicase *(Brr2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
MA_10429486g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.04 | OrthoFinder output from all 47 species | |
MA_10434882g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.08 | OrthoFinder output from all 47 species | |
MA_10434991g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.05 | OrthoFinder output from all 47 species | |
MA_8113344g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.07 | OrthoFinder output from all 47 species | |
MA_81219g0020 | emb1507 | DExH-box ATP-dependent RNA helicase DExH12... | 0.08 | OrthoFinder output from all 47 species | |
MA_81219g0030 | emb1507 | DExH-box ATP-dependent RNA helicase DExH12... | 0.04 | OrthoFinder output from all 47 species | |
MA_823844g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.04 | OrthoFinder output from all 47 species | |
MA_930633g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.09 | OrthoFinder output from all 47 species | |
Mp1g06890.1 | emb1507 | RNA helicase (Brr2) | 0.02 | OrthoFinder output from all 47 species | |
Mp7g00250.1 | No alias | RNA helicase (Brr2) | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g16836 | No alias | RNA helicase *(Brr2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g36113 | No alias | RNA helicase *(Brr2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Smo144158 | emb1507 | RNA processing.RNA splicing.spliceosome... | 0.03 | OrthoFinder output from all 47 species | |
Smo178863 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.05 | OrthoFinder output from all 47 species | |
Smo410613 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.05 | OrthoFinder output from all 47 species | |
Solyc06g069480.3.1 | Solyc06g069480 | DExH-box ATP-dependent RNA helicase DExH14... | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e035676_P001 | emb1507, Zm00001e035676 | RNA helicase (Brr2) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e038727_P001 | Zm00001e038727 | DExH-box ATP-dependent RNA helicase DExH14... | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0004386 | helicase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0003909 | DNA ligase activity | IEP | HCCA |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004527 | exonuclease activity | IEP | HCCA |
CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
CC | GO:0005669 | transcription factor TFIID complex | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006310 | DNA recombination | IEP | HCCA |
BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006950 | response to stress | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
MF | GO:0008144 | obsolete drug binding | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
MF | GO:0043531 | ADP binding | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
BP | GO:0050896 | response to stimulus | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
No external refs found! |