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  5. AMTR_s00110p00138300

AMTR_s00110p00138300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00110.112

Description : Pentatricopeptide repeat-containing protein At1g69290 OS=Arabidopsis thaliana


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00110p00138300

Target Alias Description ECC score Gene Family Method Actions
Ehy_g16131 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g088750.3.1 Solyc01g088750 Pentatricopeptide repeat-containing protein At1g69290... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 379 411
IPR002885 Pentatricopeptide_repeat 345 375
IPR002885 Pentatricopeptide_repeat 453 496
IPR002885 Pentatricopeptide_repeat 153 199
IPR002885 Pentatricopeptide_repeat 228 255
No external refs found!