1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00110p00069670

AMTR_s00110p00069670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00110.33

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS19 component


Gene families : OG0000873 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000873_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00110p00069670
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT3G02080 No alias Ribosomal protein S19e family protein 0.2 OrthoFinder output from all 47 species
AT5G15520 No alias Ribosomal protein S19e family protein 0.1 OrthoFinder output from all 47 species
AT5G61170 No alias Ribosomal protein S19e family protein 0.27 OrthoFinder output from all 47 species
Adi_g052443 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g101823 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g107544 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g125386 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g125842 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g20886 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Als_g07025 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Als_g16944 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Als_g52835 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g60492 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aob_g05435 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g00927 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Aop_g14490 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Aop_g57031 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene53442.t1 Aspi01Gene53442 component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g011210 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Azfi_s0014.g013681 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Cba_g29626 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g69716 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.11G061300.1 Ceric.11G061300 component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.24G077600.1 Ceric.24G077600 component *(eS19) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021017.6 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Cre02.g106600 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 OrthoFinder output from all 47 species
Dac_g02533 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Dac_g22936 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Dcu_g21083 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g29784 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g30993 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Dcu_g32936 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dde_g03627 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g00300 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01007908001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 OrthoFinder output from all 47 species
GSVIVT01012199001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 OrthoFinder output from all 47 species
Gb_40460 No alias component RPS19 of SSU proteome 0.13 OrthoFinder output from all 47 species
LOC_Os03g31090.1 LOC_Os03g31090 component RPS19 of SSU proteome 0.18 OrthoFinder output from all 47 species
Lfl_g15415 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g20323 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Lfl_g21216 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g31872 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
MA_10427917g0010 No alias component RPS19 of SSU proteome 0.19 OrthoFinder output from all 47 species
MA_7685779g0010 No alias component RPS19 of SSU proteome 0.03 OrthoFinder output from all 47 species
MA_9301411g0010 No alias component RPS19 of SSU proteome 0.14 OrthoFinder output from all 47 species
Mp1g27380.1 No alias component RPS19 of SSU proteome 0.23 OrthoFinder output from all 47 species
Msp_g37856 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Msp_g43925 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Nbi_g03378 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Nbi_g27238 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ore_g34855 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Pir_g00273 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g00747 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g62458 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c14_19640V3.1 Pp3c14_19640 Ribosomal protein S19e family protein 0.11 OrthoFinder output from all 47 species
Pp3c17_15200V3.1 Pp3c17_15200 Ribosomal protein S19e family protein 0.08 OrthoFinder output from all 47 species
Pp3c1_28780V3.1 Pp3c1_28780 Ribosomal protein S19e family protein 0.14 OrthoFinder output from all 47 species
Pp3c27_2780V3.1 Pp3c27_2780 Ribosomal protein S19e family protein 0.01 OrthoFinder output from all 47 species
Pp3c2_10060V3.1 Pp3c2_10060 Ribosomal protein S19e family protein 0.12 OrthoFinder output from all 47 species
Ppi_g00396 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g02540 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g10706 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g19866 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g28533 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ppi_g41385 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019638 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g12907 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Sam_g14851 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g22603 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.2 OrthoFinder output from all 47 species
Sam_g22812 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g27047 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g30614 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g31814 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.18 OrthoFinder output from all 47 species
Sam_g41631 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Sam_g42204 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g46027 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g47692 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo153225 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder output from all 47 species
Solyc03g115360.3.1 Solyc03g115360 component RPS19 of SSU proteome 0.18 OrthoFinder output from all 47 species
Solyc12g039120.2.1 Solyc12g039120 component RPS19 of SSU proteome 0.19 OrthoFinder output from all 47 species
Spa_g02912 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Spa_g11663 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Spa_g33409 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Spa_g34367 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Spa_g41565 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Spa_g43576 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Tin_g14125 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Zm00001e002011_P001 Zm00001e002011 component RPS19 of SSU proteome 0.22 OrthoFinder output from all 47 species
Zm00001e038053_P003 Zm00001e038053 component RPS19 of SSU proteome 0.26 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016530 metallochaperone activity IEP HCCA
MF GO:0016531 copper chaperone activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001266 Ribosomal_S19e 5 134
No external refs found!