1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00109p00134110

AMTR_s00109p00134110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.140

Description : Protein JINGUBANG OS=Arabidopsis thaliana


Gene families : OG0000309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00134110

Target Alias Description ECC score Gene Family Method Actions
AT1G49450 No alias Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g24032 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g25514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05746.t1 Aspi01Gene05746 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72933.t1 Aspi01Gene72933 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010472 No alias not classified & original description: CDS=1-1746 0.03 OrthoFinder output from all 47 species
Cba_g52387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.13G024900.1 Ceric.13G024900 not classified & original description: pacid=50636356... 0.03 OrthoFinder output from all 47 species
Ceric.28G012600.1 Ceric.28G012600 not classified & original description: pacid=50570711... 0.02 OrthoFinder output from all 47 species
Dac_g40515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005091001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01007589001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01035639001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_14478 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g42710.1 LOC_Os03g42710 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g36861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10431396g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_107471g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_49329g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g32500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo66275 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc02g090150.1.1 Solyc02g090150 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc03g111780.1.1 Solyc03g111780 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc04g005020.3.1 Solyc04g005020 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc07g025140.4.1 Solyc07g025140 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Tin_g13772 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30929 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 174 204
IPR001680 WD40_repeat 306 336
IPR001680 WD40_repeat 211 245
IPR001680 WD40_repeat 346 405
No external refs found!