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  5. AMTR_s00109p00128070

AMTR_s00109p00128070 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.131

Description : Probable E3 ubiquitin-protein ligase EDA40 OS=Arabidopsis thaliana


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00109p00128070

Target Alias Description ECC score Gene Family Method Actions
Aob_g04456 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13785 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g12300 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g23778 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019190001 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os04g01160.1 LOC_Os04g01160 ubiquitin protein ligase (WAV3) 0.02 OrthoFinder output from all 47 species
LOC_Os10g32760.1 LOC_Os10g32760 Probable E3 ubiquitin-protein ligase WAVH2... 0.03 OrthoFinder output from all 47 species
Pir_g10898 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e023000_P002 Zm00001e023000 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 93 139
IPR002035 VWF_A 278 416
No external refs found!