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  5. AMTR_s00109p00089980

AMTR_s00109p00089980 (GC5,...)


Aliases : GC5, evm_27.TU.AmTr_v1.0_scaffold00109.75

Description : Vesicle trafficking.target membrane tethering.Golgi membrane tethering factors.GC5/TMF-type golgin


Gene families : OG0003150 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003150_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00089980
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Als_g09947 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.02 OrthoFinder output from all 47 species
Ceric.20G030700.1 GC5, Ceric.20G030700 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000388.17 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre03.g187000 GC5 Golgin candidate 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01038690001 GC5 Vesicle trafficking.target membrane tethering.Golgi... 0.03 OrthoFinder output from all 47 species
Len_g10407 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.04 OrthoFinder output from all 47 species
Tin_g20654 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.02 OrthoFinder output from all 47 species
Zm00001e026507_P001 GC5, Zm00001e026507 golgin (GC5/TMF) 0.03 OrthoFinder output from all 47 species
Zm00001e026510_P001 GC5, Zm00001e026510 Golgin candidate 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e032402_P001 GC5, Zm00001e032402 golgin (GC5/TMF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
InterPro domains Description Start Stop
IPR022091 TMF_TATA-bd 834 943
IPR022092 TMF_DNA-bd 417 488
No external refs found!