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  5. AMTR_s00109p00029010

AMTR_s00109p00029010 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.14

Description : Regulator of telomere elongation helicase 1 homolog OS=Oryza sativa subsp. japonica


Gene families : OG0007194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007194_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00029010
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AT1G79890 No alias RAD3-like DNA-binding helicase protein 0.03 OrthoFinder output from all 47 species
Aop_g13802 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cre07.g322300 No alias Regulator of telomere elongation helicase 1 homolog... 0.03 OrthoFinder output from all 47 species
Dcu_g03073 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
GSVIVT01017082001 No alias Regulator of telomere elongation helicase 1 homolog... 0.01 OrthoFinder output from all 47 species
Gb_07340 No alias Regulator of telomere elongation helicase 1 homolog... 0.04 OrthoFinder output from all 47 species
LOC_Os05g13300.1 LOC_Os05g13300 Regulator of telomere elongation helicase 1 homolog... 0.16 OrthoFinder output from all 47 species
Mp2g24230.1 No alias Regulator of telomere elongation helicase 1 homolog... 0.08 OrthoFinder output from all 47 species
Mp2g24240.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g21616 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004622 No alias not classified & original description: CDS=1-2601 0.02 OrthoFinder output from all 47 species
Solyc06g066670.4.1 Solyc06g066670 Regulator of telomere elongation helicase 1 homolog... 0.03 OrthoFinder output from all 47 species
Zm00001e031341_P004 Zm00001e031341 Regulator of telomere elongation helicase 1 homolog... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR010614 DEAD_2 201 388
IPR006555 ATP-dep_Helicase_C 649 847
No external refs found!