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  5. AMTR_s00107p00143110

AMTR_s00107p00143110 (PTB2, ATPTB2,...)


Aliases : PTB2, ATPTB2, evm_27.TU.AmTr_v1.0_scaffold00107.42

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.PTB-type splicing factor


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00107p00143110

Target Alias Description ECC score Gene Family Method Actions
Ceric.07G100400.1 PTB2, ATPTB2,... RNA splicing factor *(PTB) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g38746 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g25980.2 PTB1, PTB,... PTB-type RNA splicing factor 0.04 OrthoFinder output from all 47 species
Lfl_g06615 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g19666 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g10030.1 PTB2, ATPTB2 PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
Pnu_g11612 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA

No InterPro domains available for this sequence

No external refs found!