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  5. AMTR_s00107p00082420

AMTR_s00107p00082420 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00107.24

Description : DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00107p00082420

Target Alias Description ECC score Gene Family Method Actions
AT1G63250 No alias DEA(D/H)-box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT5G08610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Adi_g059684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06941 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000854 No alias not classified & original description: CDS=1-1434 0.04 OrthoFinder output from all 47 species
Azfi_s0205.g057731 No alias mRNA helicase *(RH31) & original description: CDS=150-1823 0.03 OrthoFinder output from all 47 species
Cba_g15777 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g12157 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06438 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019804001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os01g43120.1 LOC_Os01g43120 DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os06g33520.1 LOC_Os06g33520 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Len_g12117 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g20661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53381 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016250 No alias mRNA helicase *(RH31) & original description: CDS=190-2310 0.03 OrthoFinder output from all 47 species
Sam_g13628 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34517 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g095740.4.1 Solyc01g095740 DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc12g056340.2.1 Solyc12g056340 Probable DEAD-box ATP-dependent RNA helicase 48... 0.03 OrthoFinder output from all 47 species
Tin_g18878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e016261_P001 Zm00001e016261 DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e020452_P002 Zm00001e020452 DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Zm00001e037076_P003 Zm00001e037076 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 406 582
IPR001650 Helicase_C 657 733
No external refs found!