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  5. AMTR_s00106p00100050

AMTR_s00106p00100050 (MEE44,...)


Aliases : MEE44, evm_27.TU.AmTr_v1.0_scaffold00106.71

No description available


Gene families : OG0004619 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00106p00100050

Target Alias Description ECC score Gene Family Method Actions
AT4G00060 MEE44 Nucleotidyltransferase family protein 0.04 OrthoFinder output from all 47 species
Ala_g19743 MEE44 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06425 MEE44 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14171.t1 MEE44, Aspi01Gene14171 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G072500.1 MEE44, Ceric.11G072500 not classified & original description: pacid=50595400... 0.03 OrthoFinder output from all 47 species
GSVIVT01018154001 MEE44 No description available 0.07 OrthoFinder output from all 47 species
Gb_00149 MEE44 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g45800.1 MEE44, LOC_Os06g45800 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g08716 MEE44 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp2g23120.1 MEE44 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002874 MEE44 not classified & original description: CDS=772-5031 0.02 OrthoFinder output from all 47 species
Zm00001e030357_P002 MEE44, Zm00001e030357 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002058 PAP_assoc 1433 1486
IPR002934 Polymerase_NTP_transf_dom 1194 1281
No external refs found!