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Aliases : RACK1B_AT, evm_27.TU.AmTr_v1.0_scaffold00105.26
Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RACK1 associated component
Gene families : OG0002231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002231_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G18080 | ATARCA, RACK1A, RACK1A_AT | Transducin/WD40 repeat-like superfamily protein | 0.11 | OrthoFinder output from all 47 species | |
| AT1G48630 | RACK1B_AT | receptor for activated C kinase 1B | 0.11 | OrthoFinder output from all 47 species | |
| AT3G18130 | RACK1C_AT | receptor for activated C kinase 1C | 0.15 | OrthoFinder output from all 47 species | |
| Adi_g076309 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g098685 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g099257 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g115754 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g12720 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Als_g20137 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g32831 | RACK1B_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.08 | OrthoFinder output from all 47 species | |
| Als_g39123 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g59033 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g00477 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g06871 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.13 | OrthoFinder output from all 47 species | |
| Azfi_s0113.g045894 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.1 | OrthoFinder output from all 47 species | |
| Cba_g15083 | RACK1B_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g27545 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.02G088700.1 | RACK1C_AT,... | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.16 | OrthoFinder output from all 47 species | |
| Ceric.34G016800.1 | RACK1C_AT,... | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000169.6 | RACK1C_AT | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.08 | OrthoFinder output from all 47 species | |
| Cre06.g278222 | RACK1C_AT | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.15 | OrthoFinder output from all 47 species | |
| Dac_g14184 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g07482 | RACK1B_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g07514 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01008395001 | MYB4R1, AtMYB4R1 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.11 | OrthoFinder output from all 47 species | |
| Gb_33900 | RACK1B_AT | associated component RACK1 of SSU proteome | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os01g49290.1 | RACK1C_AT, LOC_Os01g49290 | associated component RACK1 of SSU proteome | 0.13 | OrthoFinder output from all 47 species | |
| LOC_Os05g47890.1 | RACK1C_AT, LOC_Os05g47890 | associated component RACK1 of SSU proteome | 0.12 | OrthoFinder output from all 47 species | |
| Lfl_g05286 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10435947g0010 | RACK1B_AT | Guanine nucleotide-binding protein subunit beta-like... | 0.1 | OrthoFinder output from all 47 species | |
| Mp3g15630.1 | RACK1C_AT | associated component RACK1 of SSU proteome | 0.24 | OrthoFinder output from all 47 species | |
| Msp_g08733 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.1 | OrthoFinder output from all 47 species | |
| Nbi_g06103 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
| Nbi_g06109 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g12442 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g29110 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g60883 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g25423 | RACK1B_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g33109 | RID3 | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0002.g000970 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g19034 | No alias | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.09 | OrthoFinder output from all 47 species | |
| Sam_g19035 | No alias | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Smo266532 | RACK1C_AT | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.09 | OrthoFinder output from all 47 species | |
| Solyc03g119040.3.1 | RACK1B_AT, Solyc03g119040 | associated component RACK1 of SSU proteome | 0.19 | OrthoFinder output from all 47 species | |
| Solyc06g069010.3.1 | RACK1B_AT, Solyc06g069010 | associated component RACK1 of SSU proteome | 0.21 | OrthoFinder output from all 47 species | |
| Spa_g01709 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g16013 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.1 | OrthoFinder output from all 47 species | |
| Spa_g25398 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.08 | OrthoFinder output from all 47 species | |
| Spa_g25399 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.14 | OrthoFinder output from all 47 species | |
| Tin_g04974 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g45000 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e026456_P001 | RACK1C_AT, Zm00001e026456 | associated component RACK1 of SSU proteome | 0.13 | OrthoFinder output from all 47 species | |
| Zm00001e032340_P001 | RACK1C_AT, Zm00001e032340 | associated component RACK1 of SSU proteome | 0.15 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0004298 | threonine-type endopeptidase activity | IEP | HCCA |
| MF | GO:0004743 | pyruvate kinase activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005622 | intracellular anatomical structure | IEP | HCCA |
| CC | GO:0005839 | proteasome core complex | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006096 | glycolytic process | IEP | HCCA |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006414 | translational elongation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009056 | catabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| MF | GO:0030955 | potassium ion binding | IEP | HCCA |
| MF | GO:0031420 | alkali metal ion binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
| MF | GO:0070003 | threonine-type peptidase activity | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| No external refs found! |