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  5. AMTR_s00105p00048810

AMTR_s00105p00048810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00105.23

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL12 component


Gene families : OG0001473 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00105p00048810
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT2G37190 No alias Ribosomal protein L11 family protein 0.33 OrthoFinder output from all 47 species
AT3G53430 No alias Ribosomal protein L11 family protein 0.17 OrthoFinder output from all 47 species
AT5G60670 No alias Ribosomal protein L11 family protein 0.23 OrthoFinder output from all 47 species
Adi_g063886 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g116841 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g29977 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ala_g38012 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Als_g04839 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g10325 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Als_g50372 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g62499 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aop_g06826 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Aop_g52643 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g70967 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Azfi_s0004.g008501 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0279.g062260 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ceric.15G067600.1 Ceric.15G067600 component *(uL11) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Ceric.23G070600.1 Ceric.23G070600 component *(uL11) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.27 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 OrthoFinder output from all 47 species
Cre12.g528750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.26 OrthoFinder output from all 47 species
Dac_g01966 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Dcu_g34940 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
GSVIVT01016274001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01025189001 No alias No description available 0.2 OrthoFinder output from all 47 species
GSVIVT01025683001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
LOC_Os02g47140.1 LOC_Os02g47140 component RPL12 of LSU proteome component 0.19 OrthoFinder output from all 47 species
LOC_Os04g50990.1 LOC_Os04g50990 component RPL12 of LSU proteome component 0.33 OrthoFinder output from all 47 species
Len_g13594 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Len_g23627 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g16793 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g22014 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g36573 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10427147g0010 No alias component RPL12 of LSU proteome component 0.25 OrthoFinder output from all 47 species
Mp3g02020.1 No alias component RPL12 of LSU proteome component 0.36 OrthoFinder output from all 47 species
Msp_g02657 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Msp_g37966 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Msp_g38598 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Msp_g45524 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Nbi_g12624 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g02380 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Pir_g02937 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pp3c15_14410V3.1 Pp3c15_14410 Ribosomal protein L11 family protein 0.21 OrthoFinder output from all 47 species
Pp3c6_19290V3.1 Pp3c6_19290 Ribosomal protein L11 family protein 0.12 OrthoFinder output from all 47 species
Ppi_g06745 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g23184 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ppi_g28177 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g39860 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g02646 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g05606 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g06787 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g06788 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g33904 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g40646 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Smo227409 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Solyc06g075180.1.1 Solyc06g075180 component RPL12 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Solyc11g065670.1.1 Solyc11g065670 component RPL12 of LSU proteome component 0.22 OrthoFinder output from all 47 species
Solyc11g069440.1.1 Solyc11g069440 component RPL12 of LSU proteome component 0.26 OrthoFinder output from all 47 species
Spa_g04458 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Spa_g04459 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Spa_g04460 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g06495 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Spa_g22192 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g46996 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Tin_g23699 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e007067_P001 Zm00001e007067 component RPL12 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Zm00001e008316_P001 Zm00001e008316 component RPL12 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Zm00001e023297_P001 Zm00001e023297 component RPL12 of LSU proteome component 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR020783 Ribosomal_L11_C 75 144
IPR020784 Ribosomal_L11_N 13 70
No external refs found!