AMTR_s00105p00023120 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00105.4

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL4 component

Gene families : OG0002398 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002398_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00105p00023120

Target	Alias	Description	ECC score	Gene Family Method
AT3G09630	No alias	Ribosomal protein L4/L1 family	0.12	OrthoFinder output from all 47 species
AT5G02870	No alias	Ribosomal protein L4/L1 family	0.07	OrthoFinder output from all 47 species
Ala_g04140	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g12528	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.07G041200.1	Ceric.07G041200	component *(uL4) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Ceric.18G033500.1	Ceric.18G033500	component *(uL4) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00022075.53	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Cre09.g397697	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Dac_g17142	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g02515	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Gb_21885	No alias	component RPL4 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os03g58204.1	LOC_Os03g58204	component RPL4 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os07g08330.1	LOC_Os07g08330	component RPL4 of LSU proteome component	0.06	OrthoFinder output from all 47 species
MA_9991417g0010	No alias	component RPL4 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Mp4g20310.1	No alias	component RPL4 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Msp_g01521	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g16964	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ore_g14115	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g17839	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c23_9380V3.1	Pp3c23_9380	Ribosomal protein L4/L1 family	0.03	OrthoFinder output from all 47 species
Ppi_g08865	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g13131	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g13132	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g25486	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Solyc09g007250.4.1	Solyc09g007250	component RPL4 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Solyc10g084350.2.1	Solyc10g084350	component RPL4 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Solyc10g086010.2.1	Solyc10g086010	component RPL4 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Spa_g04220	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Spa_g43372	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Tin_g14297	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e005988_P001	Zm00001e005988	component RPL4 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e011456_P002	Zm00001e011456	component RPL4 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e032938_P001	Zm00001e032938	component RPL4 of LSU proteome component	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000015	phosphopyruvate hydratase complex	IEP	HCCA
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004634	phosphopyruvate hydratase activity	IEP	HCCA
MF	GO:0004743	pyruvate kinase activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0030955	potassium ion binding	IEP	HCCA
MF	GO:0031420	alkali metal ion binding	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002136	Ribosomal_L4/L1e	28	268
IPR025755	Ribos_L4_C_dom	281	359

External Links

No external refs found!

AMTR_s00105p00023120 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation