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  5. AMTR_s00104p00152930

AMTR_s00104p00152930 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00104.79

No description available


Gene families : OG0000196 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000196_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00104p00152930
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00146080 RPS2,... Disease resistance protein RPS2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00078p00178260 RFL1,... No description available 0.03 OrthoFinder output from all 47 species
AT1G52660 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 OrthoFinder output from all 47 species
AT5G63020 No alias Disease resistance protein (CC-NBS-LRR class) family 0.03 OrthoFinder output from all 47 species
Aspi01Gene55099.t1 ZAR1, Aspi01Gene55099 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56659.t1 Aspi01Gene56659 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014159001 No alias Disease resistance protein SUMM2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01017267001 No alias Disease resistance protein SUMM2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01020273001 No alias Probable disease resistance protein At5g63020... 0.04 OrthoFinder output from all 47 species
GSVIVT01020293001 No alias Disease resistance protein SUMM2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_01077 RPS2 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_04767 RPS2 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_12853 RPS2 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_12854 RPS2 Disease resistance protein SUMM2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_15877 No alias Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_16713 RPS2 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_22369 RPS5 Disease resistance protein RPS5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os03g10910.1 RPS2, LOC_Os03g10910 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g39460.1 RPS2, LOC_Os04g39460 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os09g14100.1 RPS2, LOC_Os09g14100 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10432620g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10436071g0010 No alias Probable disease resistance protein At4g27220... 0.03 OrthoFinder output from all 47 species
MA_125257g0010 No alias Probable disease resistance protein At4g27220... 0.03 OrthoFinder output from all 47 species
MA_55265g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_733g0010 No alias Probable disease resistance protein At1g15890... 0.04 OrthoFinder output from all 47 species
MA_8641674g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_90078g0010 No alias Disease resistance protein RPS5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp3g09150.1 No alias Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp3g09210.1 No alias Probable disease resistance protein At4g27220... 0.02 OrthoFinder output from all 47 species
Smo108463 No alias Probable disease resistance protein RPP1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc06g048910.2.1 Solyc06g048910 Disease resistance protein At4g27190 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g007790.1.1 Solyc11g007790 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!