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  5. AMTR_s00104p00092530

AMTR_s00104p00092530 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00104.35

Description : Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006891_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00104p00092530
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Adi_g010088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03021 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene06568.t1 Aspi01Gene06568 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08439 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre08.g381516 No alias Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum 0.02 OrthoFinder output from all 47 species
Ehy_g00872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12860 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008152 metabolic process IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016841 ammonia-lyase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA

No InterPro domains available for this sequence

No external refs found!