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  5. AMTR_s00102p00107760

AMTR_s00102p00107760 (PSBG,...)


Aliases : PSBG, evm_27.TU.AmTr_v1.0_scaffold00102.60

Description : Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhK component


Gene families : OG0002329 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002329_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00102p00107760
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
ATCG00430 PSBG photosystem II reaction center protein G 0.07 OrthoFinder output from all 47 species
Aev_g09763 PSBG component *(NdhK) of NDH subcomplex A & original... 0.07 OrthoFinder output from all 47 species
Azfi_s0026.g023371 PSBG not classified & original description: CDS=1-972 0.03 OrthoFinder output from all 47 species
Ceric.02G013800.1 PSBG, Ceric.02G013800 component *(NdhK) of NDH subcomplex A & original... 0.07 OrthoFinder output from all 47 species
Ceric.1Z109800.1 PSBG, Ceric.1Z109800 component *(NdhK) of NDH subcomplex A & original... 0.04 OrthoFinder output from all 47 species
Cre12.g492300 No alias Cellular respiration.oxidative phosphorylation.NADH... 0.02 OrthoFinder output from all 47 species
Gb_14100 PSBG NAD(P)H-quinone oxidoreductase subunit K, chloroplastic... 0.03 OrthoFinder output from all 47 species
Gb_18611 PSBG component NdhK of NDH subcomplex A 0.04 OrthoFinder output from all 47 species
Gb_28626 PSBG component NdhK of NDH subcomplex A 0.04 OrthoFinder output from all 47 species
LOC_Os01g58022.1 PSBG, LOC_Os01g58022 component NdhK of NDH subcomplex A 0.05 OrthoFinder output from all 47 species
Lfl_g05990 PSBG component *(NdhK) of NDH subcomplex A & original... 0.07 OrthoFinder output from all 47 species
Mpzg00990.1 PSBG component NdhK of NDH subcomplex A 0.05 OrthoFinder output from all 47 species
Smo4549 PSBG Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.09 OrthoFinder output from all 47 species
Smo4550 PSBG Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.09 OrthoFinder output from all 47 species
Solyc00g500062.1.1 PSBG, Solyc00g500062 component NdhK of NDH subcomplex A 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEA Interproscan
MF GO:0048038 quinone binding IEA Interproscan
MF GO:0051539 4 iron, 4 sulfur cluster binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042773 ATP synthesis coupled electron transport IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006137 NADH_UbQ_OxRdtase-like_20kDa 129 203
IPR000440 NADH_UbQ/plastoQ_OxRdtase_su3 2 35
No external refs found!