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  5. AMTR_s00102p00105080

AMTR_s00102p00105080 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00102.58

Description : NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica


Gene families : OG0002858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002858_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00102p00105080
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272610 evm_27.TU.AmTr_v1... NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT2G07689 No alias NADH-Ubiquinone/plastoquinone (complex I) protein 0.03 OrthoFinder output from all 47 species
ATCG00890 NDHB.1 NADH-Ubiquinone/plastoquinone (complex I) protein 0.09 OrthoFinder output from all 47 species
ATCG01250 NDHB.2 NADH-Ubiquinone/plastoquinone (complex I) protein 0.09 OrthoFinder output from all 47 species
ATMG01320 NAD2B, NAD2.2, NAD2 NADH dehydrogenase 2B 0.05 OrthoFinder output from all 47 species
Aev_g13772 NDHB.1 component *(NdhB) of NDH membrane subcomplex M &... 0.08 OrthoFinder output from all 47 species
Aob_g05863 NDHB.1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16276 NAD2B, NAD2.2, NAD2 component *(ND2/NQO14) of NADH dehydrogenase proton... 0.03 OrthoFinder output from all 47 species
Ceric.01G057300.1 NDHB.1, Ceric.01G057300 component *(NdhB) of NDH membrane subcomplex M &... 0.07 OrthoFinder output from all 47 species
Ceric.05G040600.1 NDHB.1, Ceric.05G040600 not classified & original description: pacid=50579146... 0.04 OrthoFinder output from all 47 species
Ceric.26G042200.1 NDHB.1, Ceric.26G042200 component *(NdhB) of NDH membrane subcomplex M &... 0.04 OrthoFinder output from all 47 species
Ceric.29G005900.1 NDHB.1, Ceric.29G005900 not classified & original description: pacid=50624802... 0.06 OrthoFinder output from all 47 species
Ceric.29G006000.1 NDHB.1, Ceric.29G006000 not classified & original description: pacid=50625919... 0.05 OrthoFinder output from all 47 species
Dcu_g42753 NDHB.1 component *(NdhB) of NDH membrane subcomplex M &... 0.04 OrthoFinder output from all 47 species
GSVIVT01007203001 NAD2B, NAD2.2, NAD2 NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris 0.04 OrthoFinder output from all 47 species
Gb_06313 No alias NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia... 0.05 OrthoFinder output from all 47 species
Gb_12705 No alias NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Gb_17281 NDHB.1 NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.07 OrthoFinder output from all 47 species
Gb_18608 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.05 OrthoFinder output from all 47 species
Gb_26088 No alias NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Gb_26291 NDHB.1 component NdhB of NDH membrane subcomplex M 0.07 OrthoFinder output from all 47 species
Gb_35878 No alias NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os07g25004.1 NDHB.1, LOC_Os07g25004 component NdhB of NDH membrane subcomplex M 0.07 OrthoFinder output from all 47 species
LOC_Os08g15248.1 NDHB.1, LOC_Os08g15248 component NdhB of NDH membrane subcomplex M 0.07 OrthoFinder output from all 47 species
Lfl_g33043 NDHB.1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g33049 NDHB.1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_9734021g0010 No alias NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g25819 NAD2B, NAD2.2, NAD2 component *(ND2/NQO14) of NADH dehydrogenase proton... 0.04 OrthoFinder output from all 47 species
Sam_g15901 No alias component *(ND2/NQO14) of NADH dehydrogenase proton... 0.03 OrthoFinder output from all 47 species
Smo137726 NDHB.1 Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.09 OrthoFinder output from all 47 species
Smo138433 No alias NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha 0.05 OrthoFinder output from all 47 species
Solyc00g500146.1.1 NDHB.1, Solyc00g500146 NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.11 OrthoFinder output from all 47 species
Solyc00g500314.1.1 Solyc00g500314 NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris... 0.08 OrthoFinder output from all 47 species
Solyc01g017170.1.1 NDHB.1, Solyc01g017170 NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.04 OrthoFinder output from all 47 species
Solyc03g063500.1.1 Solyc03g063500 NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Solyc03g122010.1.1 NDHB.1, Solyc03g122010 NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.09 OrthoFinder output from all 47 species
Solyc09g050069.1.1 NDHB.1, Solyc09g050069 NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.07 OrthoFinder output from all 47 species
Solyc09g050070.1.1 NDHB.1, Solyc09g050070 NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.07 OrthoFinder output from all 47 species
Solyc10g061887.1.1 NDHB.1, Solyc10g061887 component NdhB of NDH membrane subcomplex M 0.07 OrthoFinder output from all 47 species
Solyc11g021090.3.1 NDHB.1, Solyc11g021090 NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.09 OrthoFinder output from all 47 species
Solyc12g033020.1.1 NDHB.1, Solyc12g033020 NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEA Interproscan
BP GO:0042773 ATP synthesis coupled electron transport IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008535 respiratory chain complex IV assembly IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001750 ND/Mrp_mem 24 158
No external refs found!