1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00101p00159320

AMTR_s00101p00159320 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00101.135

No description available


Gene families : OG0004622 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004622_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00101p00159320
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT3G12320 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.09 OrthoFinder output from all 47 species
AT5G06980 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.09 OrthoFinder output from all 47 species
Aev_g30213 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41495.t1 Aspi01Gene41495 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G053400.1 Ceric.21G053400 not classified & original description: pacid=50603518... 0.04 OrthoFinder output from all 47 species
GSVIVT01036604001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os01g17396.2 LOC_Os01g17396 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Nbi_g43306 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo417164 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc01g096630.3.1 Solyc01g096630 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Tin_g21040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e025468_P002 Zm00001e025468 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Zm00001e037970_P002 Zm00001e037970 LNK circadian clock transcriptional co-activator 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA

No InterPro domains available for this sequence

No external refs found!