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  5. AMTR_s00101p00128190

AMTR_s00101p00128190 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00101.100

Description : Transcription factor LUX OS=Arabidopsis thaliana


Gene families : OG0000124 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000124_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00101p00128190

Target Alias Description ECC score Gene Family Method Actions
AT1G67710 ARR11 response regulator 11 0.04 OrthoFinder output from all 47 species
AT2G40970 MYBC1 Homeodomain-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G16857 ARR1, RR1 response regulator 1 0.03 OrthoFinder output from all 47 species
Adi_g015963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g34149 No alias component *(LUX) of circadian clock Evening complex (EC)... 0.03 OrthoFinder output from all 47 species
Aob_g14548 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13514 LUX, PCL1 component *(LUX) of circadian clock Evening complex (EC)... 0.02 OrthoFinder output from all 47 species
Aop_g13806 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g42522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g58078 MYBC1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27417.t1 LUX, PCL1,... component *(LUX) of circadian clock Evening complex (EC)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene65339.t1 ARR1, RR1,... subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene68878.t1 ARR1, RR1,... subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69302.t1 LUX, PCL1,... component *(LUX) of circadian clock Evening complex (EC)... 0.03 OrthoFinder output from all 47 species
Azfi_s0041.g026716 ARR1, RR1 subgroup ARR-B transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g06405 LUX, PCL1 component *(LUX) of circadian clock Evening complex (EC)... 0.04 OrthoFinder output from all 47 species
Cba_g13893 ARR11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g16091 RR12, ARR12 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G121500.1 ARR11, Ceric.01G121500 subgroup ARR-B transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.04G046400.1 ARR11, Ceric.04G046400 subgroup ARR-B transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.06G008700.1 RR12, ARR12,... subgroup ARR-B transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.21G058200.1 RR12, ARR12,... subgroup ARR-B transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cre02.g083750 LUX, PCL1 Transcription factor BOA OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Dac_g02359 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g15966 ARR11 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47938 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04897 RR12, ARR12 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g40960 LUX, PCL1 component *(LUX) of circadian clock Evening complex (EC)... 0.02 OrthoFinder output from all 47 species
Ehy_g00840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08391 LUX, PCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11168 No alias component *(LUX) of circadian clock Evening complex (EC)... 0.03 OrthoFinder output from all 47 species
Ehy_g13817 No alias component *(LUX) of circadian clock Evening complex (EC)... 0.04 OrthoFinder output from all 47 species
Ehy_g20630 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010626001 ARR10, RR10 RNA biosynthesis.transcriptional activation.ARR-B... 0.02 OrthoFinder output from all 47 species
GSVIVT01024916001 LUX, PCL1 Multi-process regulation.circadian clock.evening element... 0.02 OrthoFinder output from all 47 species
GSVIVT01035051001 ARR1, RR1 RNA biosynthesis.transcriptional activation.ARR-B... 0.03 OrthoFinder output from all 47 species
Gb_10394 ARR1, RR1 B-type cytokinin ARR response activator. transcription... 0.03 OrthoFinder output from all 47 species
Gb_15501 ARR1, RR1 B-type cytokinin ARR response activator. transcription... 0.04 OrthoFinder output from all 47 species
Gb_27043 No alias Two-component response regulator ORR22 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
LOC_Os02g08500.1 ARR10, RR10,... B-type cytokinin ARR response activator. transcription... 0.02 OrthoFinder output from all 47 species
LOC_Os05g34110.1 LOC_Os05g34110 Transcription factor MYBC1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os06g43910.1 RR18, ARR18,... B-type cytokinin ARR response activator. transcription... 0.03 OrthoFinder output from all 47 species
Len_g37967 MYBC1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08772 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09396 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24241 No alias MYB-RELATED transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g26067 ARR11 subgroup ARR-B transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g28555 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g37112 LUX, PCL1 component *(LUX) of circadian clock Evening complex (EC)... 0.02 OrthoFinder output from all 47 species
MA_83273g0010 ARR1, RR1 B-type cytokinin ARR response activator. transcription... 0.03 OrthoFinder output from all 47 species
Mp4g20600.1 ARR1, RR1 B-type cytokinin ARR response activator. transcription... 0.03 OrthoFinder output from all 47 species
Msp_g15114 MYBC1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06158 RR12, ARR12 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00463 LUX, PCL1 component *(LUX) of circadian clock Evening complex (EC)... 0.02 OrthoFinder output from all 47 species
Pir_g20141 RR12, ARR12 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g39721 RR12, ARR12 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03823 LUX, PCL1 component *(LUX) of circadian clock Evening complex (EC)... 0.03 OrthoFinder output from all 47 species
Pnu_g06713 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01350 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05145 LUX, PCL1 component *(LUX) of circadian clock Evening complex (EC)... 0.02 OrthoFinder output from all 47 species
Ppi_g05219 RR12, ARR12 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011863 MYBC1 not classified & original description: CDS=1-1491 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0331.g027260 No alias component *(LUX) of circadian clock Evening complex (EC)... 0.03 OrthoFinder output from all 47 species
Spa_g02524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18223 ARR11 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22337 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g46548 ARR11 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51591 ARR10, RR10 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01192 ARR11 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018507_P001 LUX, PCL1, Zm00001e018507 component LUX of circadian clock Evening complex (EC) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0015205 nucleobase transmembrane transporter activity IEP HCCA
BP GO:0015851 nucleobase transport IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 89 139
No external refs found!