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Aev_g07329 (APUM2, PUM2)


Aliases : APUM2, PUM2

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g07329

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.03 OrthoFinder output from all 47 species
AT2G29200 PUM1, APUM1 pumilio 1 0.03 OrthoFinder output from all 47 species
Aob_g06713 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28239 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12103 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.28G029200.1 PUM1, APUM1,... not classified & original description: pacid=50569734... 0.02 OrthoFinder output from all 47 species
LOC_Os04g12480.1 APUM4, PUM4,... Pumilio homolog 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pnu_g09055 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006119 No alias phospholipase-A1 *(PC-PLA1) & original description: CDS=1-4779 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0164.g024072 APUM6, PUM6 not classified & original description: CDS=170-874 0.02 OrthoFinder output from all 47 species
Solyc03g123980.4.1 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 636 721
IPR012940 NABP 359 630
IPR001313 Pumilio_RNA-bd_rpt 989 1016
IPR001313 Pumilio_RNA-bd_rpt 870 905
IPR001313 Pumilio_RNA-bd_rpt 726 760
IPR001313 Pumilio_RNA-bd_rpt 763 789
IPR001313 Pumilio_RNA-bd_rpt 798 831
IPR001313 Pumilio_RNA-bd_rpt 943 977
IPR001313 Pumilio_RNA-bd_rpt 840 865
IPR001313 Pumilio_RNA-bd_rpt 909 940
No external refs found!