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  5. AMTR_s00101p00041820

AMTR_s00101p00041820 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00101.13

No description available


Gene families : OG0007062 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007062_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00101p00041820
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT5G22340 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.12 OrthoFinder output from all 47 species
Ala_g03958 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g09499 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0055.g033999 No alias not classified & original description: CDS=144-944 0.04 OrthoFinder output from all 47 species
Cba_g09861 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.23G022100.1 Ceric.23G022100 not classified & original description: pacid=50610821... 0.04 OrthoFinder output from all 47 species
Dcu_g02823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07626 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01036080001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_29637 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g20640.1 LOC_Os03g20640 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g48455 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Mp2g17450.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g11751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44671 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g08457 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09875 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo103361 No alias No description available 0.04 OrthoFinder output from all 47 species
Smo426174 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc11g068680.2.1 Solyc11g068680 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Spa_g16204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g32385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e038285_P001 Zm00001e038285 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004789 thiamine-phosphate diphosphorylase activity IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!