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  5. Aev_g07320

Aev_g07320


Description : component *(SRm160) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g07320

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00256890 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
AT2G29210 No alias splicing factor PWI domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g019655 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g019656 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Adi_g042058 No alias component *(SRm160) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aob_g02107 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aspi01Gene61525.t1 Aspi01Gene61525 component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.35G044600.1 Ceric.35G044600 component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dac_g07102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46327 No alias component *(SRm160) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
GSVIVT01024906001 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 OrthoFinder output from all 47 species
Len_g59868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10938 No alias component *(SRm160) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
MA_8247229g0010 No alias component SRm160 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Pir_g61010 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ppi_g42357 No alias component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Smo100233 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Solyc09g030390.3.1 Solyc09g030390 component SRm160 of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
Zm00001e001194_P001 Zm00001e001194 component SRm160 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0032039 integrator complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002483 PWI_dom 46 114
No external refs found!