AMTR_s00099p00149290 (LZF1, STH3, DBB3,...)

Aliases : LZF1, STH3, DBB3, evm_27.TU.AmTr_v1.0_scaffold00099.135

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/DBB transcription factor

Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00099p00149290

Target	Alias	Description	ECC score	Gene Family Method
Adi_g057496	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g08412	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g15657	No alias	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g19117	No alias	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene59299.t1	STO, Aspi01Gene59299	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g04332	No alias	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g11699	No alias	BBX class-IV transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g31497	No alias	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g29582	STH	BBX class-IV transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g03245	No alias	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g23286	STO	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000315	Znf_B-box	4	47
IPR000315	Znf_B-box	55	89

External Links

No external refs found!