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  5. AMTR_s00099p00115860

AMTR_s00099p00115860 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00099.99

Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana


Gene families : OG0000717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00099p00115860

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00212100 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AT2G46780 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
AT5G53680 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
AT5G53720 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g107699 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g48208 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39475.t2 Aspi01Gene39475 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49838.t1 Aspi01Gene49838 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51493.t1 Aspi01Gene51493 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0019.g015267 No alias not classified & original description: CDS=1-609 0.05 OrthoFinder output from all 47 species
Cba_g08935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g26221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G042200.1 Ceric.30G042200 not classified & original description: pacid=50608009... 0.02 OrthoFinder output from all 47 species
Dac_g11098 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g10402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08946 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037134001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_07133 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os01g65550.1 LOC_Os01g65550 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os01g72834.1 LOC_Os01g72834 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os02g51890.1 LOC_Os02g51890 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os06g11730.1 LOC_Os06g11730 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g03686 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36070 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03322 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021063 No alias not classified & original description: CDS=1090-1812 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0143.g022907 No alias not classified & original description: CDS=590-1630 0.04 OrthoFinder output from all 47 species
Solyc04g049920.4.1 Solyc04g049920 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g044470.3.1 Solyc11g044470 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g54869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001294_P001 Zm00001e001294 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e023856_P001 Zm00001e023856 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e037573_P001 Zm00001e037573 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 19 74
No external refs found!