1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00097p00139510

AMTR_s00097p00139510 (SPA2,...)


Aliases : SPA2, evm_27.TU.AmTr_v1.0_scaffold00097.38

Description : External stimuli response.light.red/far red light.COP1-SPA light signal transduction ubiquitin E3 ligase complex.SPA regulator component


Gene families : OG0000638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000638_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00097p00139510
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AT4G11110 SPA2 SPA1-related 2 0.02 OrthoFinder output from all 47 species
Adi_g015282 SPA3 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Aev_g26019 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.03 OrthoFinder output from all 47 species
Aob_g02304 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.03 OrthoFinder output from all 47 species
Aob_g16328 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13976.t1 SPA3, Aspi01Gene13976 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Cba_g25452 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.03 OrthoFinder output from all 47 species
Len_g48626 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Lfl_g16193 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
MA_423393g0010 SPA3 protein kinase (PEK). regulator component SPA of... 0.04 OrthoFinder output from all 47 species
Ore_g10809 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Smo141846 FUS1, EMB168,... External stimuli response.light.red/far red... 0.02 OrthoFinder output from all 47 species
Smo98534 SPA4 External stimuli response.light.red/far red... 0.02 OrthoFinder output from all 47 species
Spa_g55052 SPA4 regulatory component *(Spa) of COP1-Spa light signal... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006468 protein phosphorylation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR001245 Ser-Thr/Tyr_kinase_cat_dom 506 553
IPR001680 WD40_repeat 913 947
IPR001680 WD40_repeat 998 1031
No external refs found!