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  5. AMTR_s00092p00142720

AMTR_s00092p00142720 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00092.110

Description : CASP-like protein 1B2 OS=Populus trichocarpa


Gene families : OG0001933 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001933_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00092p00142720
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00176090 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Ricinus communis 0.03 OrthoFinder output from all 47 species
AMTR_s00016p00178190 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
AMTR_s00040p00135930 evm_27.TU.AmTr_v1... Casparian strip membrane protein 2 OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
AMTR_s00057p00159510 evm_27.TU.AmTr_v1... CASP-like protein 1D1 OS=Ricinus communis 0.04 OrthoFinder output from all 47 species
AT1G03700 No alias Uncharacterised protein family (UPF0497) 0.1 OrthoFinder output from all 47 species
AT1G14160 No alias Uncharacterised protein family (UPF0497) 0.07 OrthoFinder output from all 47 species
AT2G27370 No alias Uncharacterised protein family (UPF0497) 0.07 OrthoFinder output from all 47 species
AT2G36100 No alias Uncharacterised protein family (UPF0497) 0.04 OrthoFinder output from all 47 species
AT3G06390 No alias Uncharacterised protein family (UPF0497) 0.09 OrthoFinder output from all 47 species
AT3G11550 No alias Uncharacterised protein family (UPF0497) 0.03 OrthoFinder output from all 47 species
AT4G03540 No alias Uncharacterised protein family (UPF0497) 0.09 OrthoFinder output from all 47 species
AT4G15620 No alias Uncharacterised protein family (UPF0497) 0.05 OrthoFinder output from all 47 species
AT4G20390 No alias Uncharacterised protein family (UPF0497) 0.11 OrthoFinder output from all 47 species
AT5G06200 No alias Uncharacterised protein family (UPF0497) 0.05 OrthoFinder output from all 47 species
AT5G15290 No alias Uncharacterised protein family (UPF0497) 0.05 OrthoFinder output from all 47 species
AT5G44550 No alias Uncharacterised protein family (UPF0497) 0.11 OrthoFinder output from all 47 species
GSVIVT01008618001 No alias CASP-like protein 1F1 OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
GSVIVT01010992001 No alias CASP-like protein 1E1 OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
GSVIVT01020544001 No alias CASP-like protein 1C2 OS=Vitis vinifera 0.11 OrthoFinder output from all 47 species
GSVIVT01037957001 No alias CASP-like protein 1B2 OS=Vitis vinifera 0.11 OrthoFinder output from all 47 species
Gb_11696 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.06 OrthoFinder output from all 47 species
Gb_11697 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.06 OrthoFinder output from all 47 species
Gb_12158 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_12159 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 OrthoFinder output from all 47 species
Gb_26811 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_26813 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 OrthoFinder output from all 47 species
Gb_40899 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.06 OrthoFinder output from all 47 species
LOC_Os01g13560.1 LOC_Os01g13560 CASP-like protein 1C1 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
LOC_Os01g26120.1 LOC_Os01g26120 CASP-like protein 1E1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os02g36845.1 LOC_Os02g36845 Casparian strip membrane protein 7 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
LOC_Os04g38690.1 LOC_Os04g38690 Casparian strip membrane protein 1 OS=Oryza rufipogon... 0.06 OrthoFinder output from all 47 species
LOC_Os04g58760.1 LOC_Os04g58760 Casparian strip membrane protein 1 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
LOC_Os05g15630.1 LOC_Os05g15630 CASP-like protein BLE3 OS=Oryza sativa subsp. indica... 0.08 OrthoFinder output from all 47 species
LOC_Os06g12500.1 LOC_Os06g12500 Casparian strip membrane protein 3 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
LOC_Os07g26110.1 LOC_Os07g26110 CASP-like protein 1D1 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os08g01160.1 LOC_Os08g01160 Casparian strip membrane protein 2 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os12g41690.1 LOC_Os12g41690 CASP-like protein 1B1 OS=Oryza sativa subsp. japonica... 0.08 OrthoFinder output from all 47 species
Lfl_g29809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_1041g0010 No alias Casparian strip membrane protein 2 OS=Triphysaria... 0.06 OrthoFinder output from all 47 species
MA_10431939g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.06 OrthoFinder output from all 47 species
MA_5227376g0010 No alias Casparian strip membrane protein 1 OS=Picea glauca... 0.05 OrthoFinder output from all 47 species
MA_5618864g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 OrthoFinder output from all 47 species
MA_64798g0010 No alias Casparian strip membrane protein 1 OS=Picea glauca... 0.06 OrthoFinder output from all 47 species
MA_67384g0020 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.04 OrthoFinder output from all 47 species
MA_90653g0010 No alias no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
MA_93690g0010 No alias Casparian strip membrane protein 1 OS=Pinus taeda... 0.04 OrthoFinder output from all 47 species
MA_94788g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.06 OrthoFinder output from all 47 species
Pir_g03800 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g067300.3.1 Solyc01g067300 CASP-like protein 1D1 OS=Populus trichocarpa... 0.06 OrthoFinder output from all 47 species
Solyc02g067190.4.1 Solyc02g067190 Casparian strip membrane protein 1 OS=Solanum tuberosum... 0.04 OrthoFinder output from all 47 species
Solyc02g069730.3.1 Solyc02g069730 CASP-like protein 1B1 OS=Ricinus communis... 0.12 OrthoFinder output from all 47 species
Solyc02g088160.4.1 Solyc02g088160 Casparian strip membrane protein 3 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Solyc03g097720.4.1 Solyc03g097720 CASP-like protein 1F1 OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Solyc04g005620.3.1 Solyc04g005620 Casparian strip membrane protein 2 OS=Solanum demissum... 0.06 OrthoFinder output from all 47 species
Solyc06g074230.3.1 Solyc06g074230 Casparian strip membrane protein 2 OS=Triphysaria... 0.04 OrthoFinder output from all 47 species
Solyc09g010200.4.1 Solyc09g010200 Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.04 OrthoFinder output from all 47 species
Solyc10g083250.2.1 Solyc10g083250 Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.05 OrthoFinder output from all 47 species
Zm00001e003216_P001 Zm00001e003216 CASP-like protein 1B1 OS=Zea mays (sp|b6tuh4|cspl2_maize : 130.0) 0.08 OrthoFinder output from all 47 species
Zm00001e006491_P001 Zm00001e006491 Casparian strip membrane protein 2 OS=Zea mays... 0.03 OrthoFinder output from all 47 species
Zm00001e015806_P001 Zm00001e015806 Casparian strip membrane protein 3 OS=Sorghum bicolor... 0.07 OrthoFinder output from all 47 species
Zm00001e017631_P001 Zm00001e017631 CASP-like protein 1E1 OS=Zea mays (sp|b4fap1|cspl4_maize : 254.0) 0.04 OrthoFinder output from all 47 species
Zm00001e021080_P001 Zm00001e021080 CASP-like protein 1U4 OS=Sorghum bicolor... 0.03 OrthoFinder output from all 47 species
Zm00001e024279_P001 Zm00001e024279 Casparian strip membrane protein 2 OS=Sorghum bicolor... 0.05 OrthoFinder output from all 47 species
Zm00001e026902_P001 Zm00001e026902 CASP-like protein 1C2 OS=Zea mays (sp|b6szu6|cspl5_maize : 227.0) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006702 CASP_dom 25 180
No external refs found!