1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00089p00172750

AMTR_s00089p00172750 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00089.105

No description available


Gene families : OG0000978 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000978_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00089p00172750

Target Alias Description ECC score Gene Family Method Actions
AT1G48090 No alias calcium-dependent lipid-binding family protein 0.11 OrthoFinder output from all 47 species
Adi_g011982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17458 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g19181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22914 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene42699.t1 Aspi01Gene42699 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene55586.t1 Aspi01Gene55586 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55587.t1 Aspi01Gene55587 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0185.g056668 No alias not classified & original description: CDS=100-1869 0.03 OrthoFinder output from all 47 species
Ceric.09G071300.1 Ceric.09G071300 not classified & original description: pacid=50588528... 0.06 OrthoFinder output from all 47 species
Ceric.09G071400.1 Ceric.09G071400 not classified & original description: pacid=50587640... 0.05 OrthoFinder output from all 47 species
Ceric.21G079300.1 Ceric.21G079300 not classified & original description: pacid=50602615... 0.08 OrthoFinder output from all 47 species
Dcu_g26863 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01013268001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01013270001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01017643001 No alias No description available 0.07 OrthoFinder output from all 47 species
Gb_35998 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g27110.1 LOC_Os02g27110 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g27130.1 LOC_Os02g27130 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g08664 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12023 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10343795g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10426328g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10428265g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10432463g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_119498g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_295252g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_36612g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_901094g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp7g07580.2 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g24541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25798 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005700 No alias not classified & original description: CDS=17-12964 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018244 No alias not classified & original description: CDS=306-11297 0.06 OrthoFinder output from all 47 species
Sam_g17487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo440026 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc08g077490.2.1 Solyc08g077490 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc09g009350.2.1 Solyc09g009350 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Solyc09g009370.4.1 Solyc09g009370 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Tin_g03561 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e024722_P001 Zm00001e024722 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
InterPro domains Description Start Stop
IPR026854 VPS13-like_N 55 165
IPR009291 Vps62 2175 2317
IPR009291 Vps62 1920 2077
No external refs found!