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  5. AMTR_s00089p00043950

AMTR_s00089p00043950 (FMA,...)


Aliases : FMA, evm_27.TU.AmTr_v1.0_scaffold00089.12

Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000768 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000768_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00089p00043950

Target Alias Description ECC score Gene Family Method Actions
AT2G46810 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g10535 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g42701 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18861.t1 FMA, Aspi01Gene18861 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29143.t1 FMA, Aspi01Gene29143 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene50659.t1 FMA, Aspi01Gene50659 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene62410.t1 FMA, Aspi01Gene62410 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g010552 FMA bHLH-type transcription factor & original description: CDS=1-1698 0.04 OrthoFinder output from all 47 species
Ceric.18G037700.1 Ceric.18G037700 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G040300.1 Ceric.21G040300 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g22750 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05220 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18918 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22149 FMA bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g25508 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26679 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01027446001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
LOC_Os05g50900.1 FMA, LOC_Os05g50900 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
LOC_Os10g23050.1 LOC_Os10g23050 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Nbi_g10985 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g38431 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66099 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33721 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01150 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63342 FMA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012172 FMA bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g28288 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g053660.3.1 FMA, Solyc05g053660 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc12g087850.3.1 Solyc12g087850 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e000161_P002 Zm00001e000161 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e014279_P001 SPCH, Zm00001e014279 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e024824_P001 SPCH, Zm00001e024824 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e037075_P001 SPCH, Zm00001e037075 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 142 193
No external refs found!