1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00088p00132770

AMTR_s00088p00132770 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.99

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HPE1 splicing factor


Gene families : OG0007581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007581_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00088p00132770

Target Alias Description ECC score Gene Family Method Actions
AT1G70200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Dcu_g11586 No alias plastidial RNA splicing factor *(HPE1) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g01458 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os02g22070.1 LOC_Os02g22070 HPE1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Mp1g21620.1 No alias HPE1 plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Solyc05g006070.4.1 Solyc05g006070 HPE1 plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species
Tin_g27023 No alias plastidial RNA splicing factor *(HPE1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e013842_P001 Zm00001e013842 HPE1 plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004392 heme oxygenase (decyclizing) activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
BP GO:0006353 DNA-templated transcription termination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006788 heme oxidation IEP HCCA
MF GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!