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  5. AMTR_s00088p00130080

AMTR_s00088p00130080 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.95

Description : Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00088p00130080

Target Alias Description ECC score Gene Family Method Actions
AT1G53460 No alias BEST Arabidopsis thaliana protein match is: Ran BP2/NZF... 0.03 OrthoFinder output from all 47 species
Ehy_g26921 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014166001 No alias No description available 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006450 regulation of translational fidelity IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006665 sphingolipid metabolic process IEP HCCA
BP GO:0006672 ceramide metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 371 397
IPR001876 Znf_RanBP2 336 360
IPR001876 Znf_RanBP2 293 317
No external refs found!