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  5. AMTR_s00088p00026960

AMTR_s00088p00026960 (SMD1, RDR2,...)


Aliases : SMD1, RDR2, evm_27.TU.AmTr_v1.0_scaffold00088.11

Description : RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00088p00026960

Target Alias Description ECC score Gene Family Method Actions
AT4G11130 SMD1, RDR2 RNA-dependent RNA polymerase 2 0.03 OrthoFinder output from all 47 species
MA_10431382g0010 SDE1, RDR6, SGS2 Probable RNA-dependent RNA polymerase SHL2 OS=Oryza... 0.03 OrthoFinder output from all 47 species
MA_467439g0010 SMD1, RDR2 RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pnu_g16856 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 374 956
No external refs found!