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  5. AMTR_s00086p00162440

AMTR_s00086p00162440 (VAP27, VAP27-1,...)


Aliases : VAP27, VAP27-1, (AT)VAP, VAP, evm_27.TU.AmTr_v1.0_scaffold00086.100

Description : Vesicle-associated protein 1-1 OS=Arabidopsis thaliana


Gene families : OG0000655 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000655_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00086p00162440

Target Alias Description ECC score Gene Family Method Actions
Adi_g088258 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Adi_g102804 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Ceric.39G059000.1 VAP27, VAP27-1,... contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Dac_g03584 PVA12 contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
MA_412813g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sam_g18032 No alias contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Zm00001e021734_P002 PVA12, Zm00001e021734 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Zm00001e027215_P001 VAP27-2, Zm00001e027215 contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR000535 MSP_dom 8 77
No external refs found!