1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00084p00087230

AMTR_s00084p00087230 (PTAC15,...)


Aliases : PTAC15, evm_27.TU.AmTr_v1.0_scaffold00084.23

Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor


Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00084p00087230

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00116710 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.05 OrthoFinder output from all 47 species
AMTR_s00010p00225250 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00225430 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
AMTR_s00060p00059830 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 OrthoFinder output from all 47 species
AMTR_s00612p00010480 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.06 OrthoFinder output from all 47 species
AMTR_s01360p00009540 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.06 OrthoFinder output from all 47 species
AT1G21150 No alias Mitochondrial transcription termination factor family protein 0.03 OrthoFinder output from all 47 species
AT1G61980 No alias Mitochondrial transcription termination factor family protein 0.03 OrthoFinder output from all 47 species
AT1G62010 No alias Mitochondrial transcription termination factor family protein 0.03 OrthoFinder output from all 47 species
AT3G46950 No alias Mitochondrial transcription termination factor family protein 0.03 OrthoFinder output from all 47 species
Ceric.30G015700.1 Ceric.30G015700 mTERF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g09151 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g24025 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_07257 PTAC15 TAC15 cofactor of plastid-encoded RNA polymerase.... 0.03 OrthoFinder output from all 47 species
Gb_15878 No alias transcription factor (mTERF) 0.06 OrthoFinder output from all 47 species
Gb_24665 No alias transcription factor (mTERF) 0.05 OrthoFinder output from all 47 species
Gb_26213 No alias transcription factor (mTERF) 0.06 OrthoFinder output from all 47 species
Gb_31439 No alias transcription factor (mTERF) 0.04 OrthoFinder output from all 47 species
LOC_Os05g33440.1 LOC_Os05g33440 transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
LOC_Os05g34160.1 LOC_Os05g34160 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
LOC_Os07g24090.1 LOC_Os07g24090 transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
MA_140519g0010 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
MA_502709g0010 No alias transcription factor (mTERF) 0.06 OrthoFinder output from all 47 species
MA_86824g0010 No alias transcription factor (mTERF) 0.05 OrthoFinder output from all 47 species
Pnu_g12328 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g082010.3.1 Solyc02g082010 transcription factor (mTERF) 0.04 OrthoFinder output from all 47 species
Solyc04g072520.3.1 Solyc04g072520 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Solyc04g072530.2.1 Solyc04g072530 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Solyc04g072550.3.1 Solyc04g072550 transcription factor (mTERF) 0.04 OrthoFinder output from all 47 species
Zm00001e031638_P001 Zm00001e031638 transcription factor (mTERF) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0007154 cell communication IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
InterPro domains Description Start Stop
IPR003690 MTERF 180 500
No external refs found!