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  5. AMTR_s00083p00036180

AMTR_s00083p00036180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00083.9

Description : RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.ERF-type transcription factor


Gene families : OG0005026 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005026_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00083p00036180

Target Alias Description ECC score Gene Family Method Actions
AT3G54750 No alias unknown protein; Has 145 Blast hits to 145 proteins in... 0.03 OrthoFinder output from all 47 species
Ceric.36G048400.1 Ceric.36G048400 not classified & original description: pacid=50568364... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021434.9 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre03.g197600 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os12g42700.1 LOC_Os12g42700 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10435763g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g10610.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc01g006700.3.1 Solyc01g006700 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e003274_P002 Zm00001e003274 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!