Aliases : evm_27.TU.AmTr_v1.0_scaffold00080.14
Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana
Gene families : OG0000717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000717_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00080p00053460 | |
Cluster | HCCA: Cluster_58 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G22330 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | OrthoFinder output from all 47 species | |
AT3G54770 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | OrthoFinder output from all 47 species | |
Ala_g19204 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0019.g015267 | No alias | not classified & original description: CDS=1-609 | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0442.g070359 | No alias | not classified & original description: CDS=461-1399 | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os01g65550.1 | LOC_Os01g65550 | Probable RNA-binding protein ARP1 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os01g72834.1 | LOC_Os01g72834 | Probable RNA-binding protein ARP1 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g16877 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0116.g021063 | No alias | not classified & original description: CDS=1090-1812 | 0.02 | OrthoFinder output from all 47 species | |
Smo100311 | No alias | Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
Solyc04g049920.4.1 | Solyc04g049920 | Probable RNA-binding protein ARP1 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Solyc11g044470.3.1 | Solyc11g044470 | Probable RNA-binding protein ARP1 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e001294_P001 | Zm00001e001294 | Probable RNA-binding protein ARP1 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0003993 | acid phosphatase activity | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
MF | GO:0005509 | calcium ion binding | IEP | HCCA |
MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | HCCA |
MF | GO:0016706 | 2-oxoglutarate-dependent dioxygenase activity | IEP | HCCA |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
MF | GO:0016791 | phosphatase activity | IEP | HCCA |
MF | GO:0016849 | phosphorus-oxygen lyase activity | IEP | HCCA |
MF | GO:0033897 | ribonuclease T2 activity | IEP | HCCA |
MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | HCCA |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
MF | GO:0051213 | dioxygenase activity | IEP | HCCA |
BP | GO:0055114 | obsolete oxidation-reduction process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 22 | 79 |
No external refs found! |