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  5. AMTR_s00080p00039920

AMTR_s00080p00039920 (CRM3, HCF152,...)


Aliases : CRM3, HCF152, evm_27.TU.AmTr_v1.0_scaffold00080.8

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF152 transcript stability factor


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00080p00039920

Target Alias Description ECC score Gene Family Method Actions
Aop_g02234 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01001186001 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015114 No alias not classified & original description: CDS=1-231 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 501 528
IPR002885 Pentatricopeptide_repeat 429 475
IPR002885 Pentatricopeptide_repeat 356 406
IPR002885 Pentatricopeptide_repeat 535 580
IPR002885 Pentatricopeptide_repeat 204 252
IPR002885 Pentatricopeptide_repeat 618 649
No external refs found!