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  5. AMTR_s00079p00185530

AMTR_s00079p00185530 (ATCRS1, CRS1,...)


Aliases : ATCRS1, CRS1, evm_27.TU.AmTr_v1.0_scaffold00079.106

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS1 splicing factor


Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00079p00185530

Target Alias Description ECC score Gene Family Method Actions
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.03 OrthoFinder output from all 47 species
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.02 OrthoFinder output from all 47 species
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 OrthoFinder output from all 47 species
Adi_g019632 EMB1865 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g01593 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.02 OrthoFinder output from all 47 species
Ala_g27469 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10843 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g18891 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12628 EMB1865 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21472 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01008296001 EMB1865 CRM-domain containing factor CFM3,... 0.02 OrthoFinder output from all 47 species
GSVIVT01015193001 No alias RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01031001001 ATCRS1, CRS1 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01032542001 ATCFM2, CFM2 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Gb_28260 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g39060.2 ATCFM2, CFM2,... CRM-domain containing factor CFM2, chloroplastic... 0.04 OrthoFinder output from all 47 species
LOC_Os05g47850.1 EMB1865, LOC_Os05g47850 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Len_g08834 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g55562 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_130902g0010 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.03 OrthoFinder output from all 47 species
Nbi_g10122 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17170 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25479 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52089 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g119450.3.1 EMB1865, Solyc03g119450 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Solyc07g039500.4.1 Solyc07g039500 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Tin_g06122 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006282 regulation of DNA repair IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 523 607
IPR001890 RNA-binding_CRM 736 823
IPR001890 RNA-binding_CRM 338 415
No external refs found!